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All functions

affinity()
Environmental affinities of taxa
binstat()
Sampling statistics and diversity indices in every bin
categorize()
Mapping multiple entries to categories
cleansp()
Cleanse Species Name Vector
seqduplicated() collapse()
Determination and omission of consecutive duplicates in a vector.
corals
Fossil occurrences of scleractinian (stony) corals from the Paleobiology Database
divDyn()
Time series from metrics of diversity dynamics
fadlad()
FAD - LAD matrix from occurrence data
fill()
Filling of missing values in a vector, based on the marginal values of the gaps
georange()
Estimation of geographic ranges from occurrence data
indices()
Scalar indices of diversity
keys
Keys to process stratigraphic, environmental and lithological information from the Paleobiology Database
matchtime()
Match the dates of a time-dependent variable with a predefined vector
modeltab()
Origination/extinction response table for statistical modelling.
omit()
Omission of taxa that have a poor occurrence record
parts()
Plot time series counts or proportions as polygons
ranges()
Plotting ranges and occurrence distributions through time
ratesplit()
Test of rate split (selectivity)
repmatch()
Replicate matching and merging
shades()
Quantile plot of time series
singletons()
List of singleton taxa
slice()
Discretization of continuous time dimension - slicing
stages
95 bin Phanerozoic time scale based on the stratigraphic stages of Gradstein et al. 2020.
stages2018
95 bin Phanerozoic time scale based on the stratigraphic stages of Ogg et al. (2016) with updated dates in some intervals (2018).
stratkeys
The FossilWorks-based lookup table for the stratigraphic assignments of collections in the Paleobiology Database
streaklog() whichmaxstreak()
Utility functions for slicing gappy time series
subsample()
Subsampling wrapper function
subtrialCR() subtrialOXW() subtrialSQS()
Subsampling trial functions
sumstat()
Occurrence database summary
survivors()
Proportions of survivorship
tabinate()
Apply function to TAxon/BIN subset of occurrences and iterATE
tens
The 10 million year resolution timescale of the Paleobiology Database
tsbars()
Function to plot a series a values with bars that have variable widths
tsplot()
Time series plotting using a custom time scale