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affinity()
- Environmental affinities of taxa
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binstat()
- Sampling statistics and diversity indices in every bin
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categorize()
- Mapping multiple entries to categories
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cleansp()
- Cleanse Species Name Vector
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seqduplicated()
collapse()
- Determination and omission of consecutive duplicates in a vector.
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corals
- Fossil occurrences of scleractinian (stony) corals from the Paleobiology Database
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divDyn()
- Time series from metrics of diversity dynamics
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fadlad()
- FAD - LAD matrix from occurrence data
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fill()
- Filling of missing values in a vector, based on the marginal values of the gaps
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georange()
- Estimation of geographic ranges from occurrence data
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indices()
- Scalar indices of diversity
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keys
- Keys to process stratigraphic, environmental and lithological information from the Paleobiology Database
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matchtime()
- Match the dates of a time-dependent variable with a predefined vector
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modeltab()
- Origination/extinction response table for statistical modelling.
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omit()
- Omission of taxa that have a poor occurrence record
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parts()
- Plot time series counts or proportions as polygons
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ranges()
- Plotting ranges and occurrence distributions through time
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ratesplit()
- Test of rate split (selectivity)
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repmatch()
- Replicate matching and merging
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shades()
- Quantile plot of time series
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singletons()
- List of singleton taxa
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slice()
- Discretization of continuous time dimension - slicing
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stages
- 95 bin Phanerozoic time scale based on the stratigraphic stages of Gradstein et al. 2020.
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stages2018
- 95 bin Phanerozoic time scale based on the stratigraphic stages of Ogg et al. (2016) with updated dates in some intervals (2018).
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stratkeys
- The FossilWorks-based lookup table for the stratigraphic assignments of collections in the Paleobiology Database
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streaklog()
whichmaxstreak()
- Utility functions for slicing gappy time series
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subsample()
- Subsampling wrapper function
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subtrialCR()
subtrialOXW()
subtrialSQS()
- Subsampling trial functions
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sumstat()
- Occurrence database summary
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survivors()
- Proportions of survivorship
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tabinate()
- Apply function to TAxon/BIN subset of occurrences and iterATE
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tens
- The 10 million year resolution timescale of the Paleobiology Database
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tsbars()
- Function to plot a series a values with bars that have variable widths
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tsplot()
- Time series plotting using a custom time scale